Matej Praprotnik
Matej Praprotnik is Head of the Theory Department at the National Institute of Chemistry and Professor of Physics at the Faculty of Mathematics and Physics, University of Ljubljana. He studied physics and received his B.S. and Ph.D. degrees from the University of Ljubljana. He carried out postdoctoral research in the Theory group at the Max Planck Institute for Polymer Research, Mainz, Germany. He has held visiting scientist positions at the Computational Science & Engineering Laboratory (ETH Zurich), the Institute for Mathematics and Its Applications (University of Minnesota), the Kavli Institute for Theoretical Physics (University of California, Santa Barbara), the Kavli Institute for Theoretical Physics China (Chinese Academy of Sciences, Beijing), and the Universitat de Barcelona Institute of Complex Systems. Matej is former Chair of the PRACE (Partnership for Advanced Computing in Europe) Scientific Steering Committee. He served as President of the Slovenian Biophysical Society from 2015 to 2019. He also serves as a Council Member of CECAM (Centre Européen de Calcul Atomique et Moléculaire) and as a Scientific Council Member of the National Institute of Chemistry. He is a recipient of the ERC Advanced Grant 2019 by the European Research Council and the Project Coordinator of MultiXscale, a EuroHPC JU Center of Excellence. His research is focused on computer simulation of soft and biological matter. The focus is on developing and combining innovative computational and theoretical methods augmented by machine learning techniques to study complex molecular systems.
Education
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								2003 
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								Ph.D. Physics University of Ljubljana
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								1998 
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								B.S. Physics University of Ljubljana
Current Position(s)
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								2025 - 
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								Head of Department (Rotational)Theory Department, National Institute of Chemistry, Ljubljana, Slovenia 
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								2018 - 
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								Professor of PhysicsDepartment of Physics, Faculty of Mathematics and Physics, University of Ljubljana, Slovenia 
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								2018 - 
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								Head of LaboratoryLaboratory for Molecular Modeling, Theory Department, National Institute of Chemistry, Ljubljana, Slovenia 
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								2017 - 
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								Research ProfessorLaboratory for Molecular Modeling, National Institute of Chemistry, Ljubljana, Slovenia 
Previous Positions
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								2019 - 2020 
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								Head of Department (Rotational)Theory Department, National Institute of Chemistry, Ljubljana, Slovenia 
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								2017 - 2018 
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								Acting Head of DepartmentDepartment of Molecular Modeling, National Institute of Chemistry, Ljubljana, Slovenia 
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								2013 - 2018 
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								Associate Professor of PhysicsDepartment of Physics, Faculty of Mathematics and Physics, University of Ljubljana, Slovenia 
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								2008 - 2013 
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								Assistant Professor of PhysicsDepartment of Physics, Faculty of Mathematics and Physics, University of Ljubljana, Slovenia 
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								2004 - 2008 
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								Postdoctoral ResearcherTheory Group, Max Planck Institute for Polymer Research, Mainz, Germany 
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								2003 - 2017 
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								(Senior, Postdoctoral) Research AssociateLaboratory for Molecular Modeling, National Institute of Chemistry, Ljubljana, Slovenia 
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								2002 - 2005 
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								Teaching AssistantDepartment of Physics, Faculty of Mathematics and Physics, University of Ljubljana, Slovenia 
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								1998 - 2003 
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								Ph.D. StudentLaboratory for Molecular Modelling and NMR Spectroscopy, National Institute of Chemistry, Ljubljana, Slovenia 
Visiting Positions
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								2025 - 
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								MemberUniversitat de Barcelona Institute of Complex Systems, University of Barcelona, Spain 
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								2017 - 2018 
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								Academic GuestComputational Science & Engineering Laboratory, ETH Zurich, Switzerland (6 months) 
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								2013 
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								Visiting ScientistKavli Institute for Theoretical Physics China, Chinese Academy of Sciences, Beijing, China (1 month) 
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								2012 
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								MemberThe Kavli Institute for Theoretical Physics, University of California, Santa Barbara, USA (2 months) 
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								2009 - 2010 
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								Academic GuestComputational Science & Engineering Laboratory, ETH Zurich, Switzerland (6 months) 
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								2008 
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							        General MemberInstitute for Mathematics and its Applications, University of Minnesota, Minneapolis, USA (1 month) 
Honors and Awards
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								2022 
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								Zois Recognition for Important Achievements in Multiscale Modeling and Simulation of Soft and Biological MatterRepublic of Slovenia 
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								2020 
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								ERC Advanced Grant 2019European Research Council 
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								2019 
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								Pregl Award for Exceptional Achievements in the Field of Chemistry and Related DisciplinesNational Institute of Chemistry 
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								2004 
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								National Institute of Chemistry Award for Outstanding Doctoral WorkNational Institute of Chemistry 
Personal Information
- Name
- prof. dr. Matej Praprotnik
- Address
- Theory Department
 National Institute of Chemistry
 Hajdrihova 19
 SI-1001 Ljubljana
 Slovenia
- praprot@cmm.ki.si
- Download my CV
